Free cash flow turned positive in 2025Q2 and reached $313.0M in 2025Q3 (25.1% FCF margin), but 2026Q2 FCF margin fell to 3.1% due to milestone timing and working capital swings, with operating cash flow at only 46% of net income.
Alnylam Pharmaceuticals, Inc. (ALNY) cash flow statement — 24-year operating, investing & financing cash flows
| Metric | TTM | Dec'25 | Dec'24 | Dec'23 | Dec'22 | Dec'21 | Dec'20 | Dec'19 | Dec'18 | Dec'17 | Dec'16 | Dec'15 | Dec'14 | Dec'13 | Dec'12 | Dec'11 | Dec'10 | Dec'09 | Dec'08 | Dec'07 | Dec'06 | Dec'05 | Dec'04 | Dec'03 | Dec'02 |
|---|
| Cash from Operations | 634.49M | 524.08M | -8.31M | 104.16M | -541.27M | -641.69M | -614.96M | -278.43M | -562.62M | -382.79M | -307.7M | -189.14M | -165.64M | -68.66M | -115.61M | -87.07M | -84.34M | -72.14M | 65.49M | 196.52M | -24.63M | -16.48M | -19.57M | -12.83M | -1.28M |
| Operating CF Margin % | - | 14.11% | -0.37% | 5.7% | -52.18% | -76% | -124.78% | -126.7% | -751.08% | -425.73% | -652.48% | -460.23% | -327.61% | -145.56% | -173.26% | -105.21% | -84.31% | -71.76% | 68.1% | 386.11% | -91.46% | -288.4% | -457.46% | -7288.64% | - |
| Operating CF Growth % | 1025.2% | 6405.1% | -107.98% | 119.24% | 15.65% | -4.35% | -120.87% | 50.51% | -46.98% | -24.4% | -62.68% | -14.19% | -141.26% | 40.61% | -32.78% | -3.23% | -16.9% | -210.16% | -66.67% | 897.88% | -49.41% | 15.76% | -52.56% | -903.76% | - |
| Net Income | 807.99M | 313.75M | -278.16M | -440.24M | -1.13B | -852.82M | -858.28M | -886.12M | -761.5M | -490.87M | -410.11M | -290.07M | -360.39M | -89.22M | -106.01M | -57.65M | -43.52M | -47.59M | -26.25M | -85.47M | -34.61M | -42.91M | -32.65M | -25.03M | -4.14M |
| Depreciation & Amortization | 54.76M | 55.66M | 56.67M | 97.03M | 85.55M | 89.69M | 74.44M | 54.37M | 6.43M | 13.37M | 15.13M | 19.05M | 11.93M | 10.23M | 9.04M | 5.13M | 4.94M | 5.99M | 5.73M | 4.08M | 3.81M | 3.12M | 2.44M | 838K | 36K |
| Stock-Based Compensation | 336.62M | 348.24M | 272.08M | 221.68M | 230.65M | 165.72M | 139.87M | 174.84M | 157.75M | 92.82M | 75.53M | 45.78M | 33.06M | 20.7M | 12.36M | 16.8M | 19.34M | 20.17M | 18.03M | 14.47M | 8.3M | 0 | 4.11M | 0 | 0 |
| Deferred Taxes | -9.61M | -2.2M | -106.76M | 0 | 0 | -55.7M | -54.04M | -11.29M | -3.56M | 1.89M | -6.98M | 0 | -42.29M | -2.69M | -22.39M | 3.5M | 10.74M | -5.16M | -5.5M | 1.89M | -7.92M | 0 | -4.11M | 0 | 0 |
| Other Non-Cash Items | -26.06M | 253.42M | 261.94M | 214.93M | 309.24M | 174.24M | 95.75M | -12.61M | -6.84M | 2.91M | 1.51M | 984K | 221.46M | 449K | 364K | 1.08M | 3.71M | 4.86M | 9.59M | 7.12M | 8.43M | 6.55M | 7.16M | 8.46M | 172K |
| Working Capital Changes | -529.22M | -444.78M | -214.08M | 10.76M | -35.55M | -162.82M | -12.7M | 402.38M | 45.1M | -2.9M | 17.22M | 35.12M | -29.4M | -8.12M | -8.96M | -55.93M | -79.56M | -50.41M | 63.9M | 254.42M | -2.65M | 16.76M | 3.48M | 2.91M | 2.65M |
| Change in Receivables | -357.64M | -359.96M | -86.55M | -87.94M | -45.6M | -101.8M | -56.24M | -24.24M | 15.24M | -10.67M | -15.04M | 31.64M | -35.69M | -4.14M | 1.36M | 12.65M | 0 | 0 | 843K | 0 | 0 | 243K | -310K | 0 | 0 |
| Change in Inventory | -11.93M | 8.47M | 13.59M | 18.37M | -34.14M | -26.41M | -35.43M | -32.41M | -22.64M | 0 | 0 | 0 | 3.29M | 191K | -1.81M | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Change in Payables | -65.76M | 75.07M | 91.09M | 80.84M | 191.77M | 88.24M | 117.38M | 36.61M | 15.48M | -4.94M | 10.1M | 1.68M | 8.84M | 1.83M | -1.74M | -3.51M | -3.18M | 9.9M | -1.24M | -264K | 2.09M | 0 | -615K | 0 | 0 |
| Cash from Investing | 74.94M | 436.33M | -116.84M | -336.35M | 169.35M | -273.3M | -435.52M | -417.68M | 272.94M | -290.36M | 142.59M | -321.32M | -548.81M | -130.5M | 3.37M | 81.96M | 17.84M | 14.43M | 17.94M | -277.43M | -30.05M | -40.42M | -34.59M | -3.24M | -562K |
| Capital Expenditures | -91.95M | -58.7M | -34.28M | -62.21M | -72.06M | -76.37M | -70.36M | -140.16M | -126.89M | -104.21M | -64.56M | -12.95M | -8.96M | -4.01M | -8.35M | -1.29M | -4.73M | -4.95M | -10.76M | -7.79M | -4.99M | -1.95M | -9.01M | -3.12M | -562K |
| CapEx % of Revenue | 1.91% | 1.58% | 1.52% | 3.4% | 6.95% | 9.05% | 14.28% | 63.78% | 169.39% | 115.9% | 136.89% | 31.51% | 17.72% | 8.49% | 12.51% | 1.56% | 4.73% | 4.92% | 11.19% | 15.3% | 18.51% | 34.06% | 210.52% | 1772.16% | - |
| Acquisitions | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -25M | 0 | 0 | -81.96M | -17.84M | -10M | -100K | 2.34M | 0 | 40.42M | 0 | -121K | 0 |
| Investments | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Other Investing | 40.38M | 57.63M | 57.76M | -4.44M | -13.19M | -4.36M | -31.2M | 23M | -14.82M | 120M | -150M | -1.47M | 0 | 0 | -162K | 81.96M | 17.84M | 6.15M | 0 | -839K | 0 | -40.42M | 0 | 0 | 0 |
| Cash from Financing | -364.24M | -305.19M | 294.16M | 172.13M | 425.75M | 1.25B | 994.98M | 823.18M | 65.47M | 1.12B | 177.83M | 616.18M | 736.47M | 200.93M | 93.41M | 738K | 3.66M | 3.51M | 3.15M | 58.63M | 166.63M | 52.62M | 50.98M | 23.71M | 17.32M |
| Debt Issued (Net) | -552.65M | -546.95M | 0 | 0 | 254M | 500M | 200M | -30M | 0 | -120M | 150M | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -6.76M | -2.38M | 1.74M | 194K | 5.34M | -1.1M | 0 |
| Equity Issued (Net) | -88.89M | 250.03M | 302.95M | 147.46M | 259.36M | 246.27M | 99.5M | 781.9M | 65.47M | 1.16B | 13.71M | 585.04M | 707.04M | 172.18M | 86.44M | 738K | 993K | 3.51M | 9.91M | 61.01M | 164.89M | 52.42M | 45.31M | 27.48M | 17.34M |
| Dividends Paid | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Share Repurchases | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -3.47M | -257K | -596K | -378K | -15.99M | -1.39M | -359K | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Other Financing | 277.3M | -8.27M | -8.79M | 24.67M | -87.61M | 500.85M | 695.48M | 71.28M | 0 | 83.89M | 14.13M | 31.14M | 29.42M | 28.74M | 6.97M | 0 | 2.67M | 0 | 0 | 0 | 0 | 0 | 327K | -2.67M | -28K |
| Net Change in Cash | 329.06M | 690.15M | 153.77M | -53.67M | 46.4M | 323.11M | -50.58M | 127M | -224.2M | 451.74M | 12.72M | 105.72M | 22.01M | 1.76M | -18.82M | -4.37M | -62.87M | -54.32M | 86.64M | -22.8M | 112.2M | -4.51M | -2.92M | 7.72M | 17.32M |
| Free Cash Flow | 542.54M | 465.38M | -42.59M | 41.95M | -613.33M | -718.07M | -685.32M | -418.58M | -689.5M | -487M | -372.26M | -202.09M | -174.6M | -72.66M | -123.96M | -88.36M | -89.07M | -77.09M | 54.73M | 188.73M | -29.62M | -18.43M | -28.58M | -15.95M | -1.84M |
| FCF Margin % | 11.29% | 12.53% | -1.89% | 2.29% | -59.12% | -85.05% | -139.05% | -190.48% | -920.47% | -541.64% | -789.37% | -491.74% | -345.33% | -154.05% | -185.77% | -106.77% | -89.04% | -76.69% | 56.91% | 370.81% | -109.97% | -322.46% | -667.98% | -9060.8% | - |
| FCF Growth % | 1141.59% | 1192.73% | -201.54% | 106.84% | 14.59% | -4.78% | -63.72% | 39.29% | -41.58% | -30.82% | -84.2% | -15.74% | -140.29% | 41.38% | -40.29% | 0.8% | -15.54% | -240.87% | -71% | 737.26% | -60.68% | 35.5% | -79.19% | -766.68% | - |
| FCF per Share | 3.92 | 3.46 | -0.33 | 0.34 | -5.04 | -6.06 | -5.96 | -3.83 | -6.85 | -5.38 | -4.35 | -2.41 | -2.35 | -1.18 | -2.47 | -2.08 | -2.12 | -1.85 | 1.33 | 4.88 | -0.93 | -0.84 | -2.40 | -16.92 | -5.55 |
| FCF Conversion (FCF/Net Income) | 0.67x | 1.67x | 0.03x | -0.24x | 0.48x | 0.75x | 0.72x | 0.31x | 0.74x | 0.78x | 0.75x | 0.65x | 0.46x | 0.77x | 1.09x | 1.51x | 1.94x | 1.52x | -2.49x | -2.30x | 0.71x | 0.38x | 0.60x | 0.51x | 0.31x |
| Interest Paid | 201.41M | 0 | 67.58M | 0 | 0 | 0 | 0 | 172K | 775K | 2.43M | 1.1M | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.5M | 0 | 0 | 0 | 0 | 0 | 0 |
| Taxes Paid | 3.65M | 0 | 14.36M | 0 | 0 | 0 | 0 | 2.57M | 1.07M | 114K | 111K | 66K | 0 | 11K | 17K | 0 | 5.77M | 5.84M | 2.67M | 0 | 0 | 0 | 0 | 0 | 0 |
Quick answers to the most common questions about buying ALNY stock.
Alnylam Pharmaceuticals, Inc. (ALNY) generated $524.1M in net cash from operating activities in 2025. This reflects the cash generated directly from core business operations.
Alnylam Pharmaceuticals, Inc. (ALNY) generated $465.4M in free cash flow in 2025. Free cash flow is the cash left over after capital expenditures, which can be used to pay dividends, repurchase shares, or pay down debt.
Alnylam Pharmaceuticals, Inc. (ALNY) spent $58.7M on capital expenditures in 2025. CapEx represents the cash invested in physical assets like property, plant, and equipment to maintain or grow the business.
Key Metrics
Top Statement Risk
High leverage and IRA risk
Metrics are mathematically derived from official filings.
Earnings Quality Masked by Non-Cash Charges
In 2026Q2, operating cash flow of $75.3M was only 46% of net income, as reported in SEC filings, with stock-based compensation of $86.6M and working capital swings distorting the conversion ratio.
The gap between net income and operating cash flow is stark, particularly in 2026Q2 where OCF/NI stood at 0.46, suggesting that reported profitability is not yet translating into cash at the same pace. The large working capital changes, especially the -$281.7M in 2026Q1, indicate that revenue growth is consuming cash through receivables and inventory, which may normalize as the commercial infrastructure matures. Investors should monitor whether cash conversion improves as the company scales, or if the persistent SBC expense continues to inflate earnings relative to cash generation.
Free Cash Flow Inflection Point Reached
Free cash flow turned positive in 2025Q2 and reached $313.0M in 2025Q3, as per financial statements, with FCF margin expanding to 25.1% before settling at 3.1% in 2026Q2 due to milestone timing.
The trajectory shows a clear inflection from negative FCF in early 2024 to positive and growing through 2025, driven by the Amvuttra launch and milestone payments. However, the 2026Q2 FCF margin of 3.1% is a sharp drop from the 25.1% in 2025Q3, indicating that the recent quarter's cash generation is not yet sustainable. The volatility suggests that FCF is heavily influenced by one-time collaboration payments and working capital swings, so the underlying run-rate may be more modest than the peak quarters imply.
Capital Expenditures Remain Modest
Capital expenditures averaged only 1.8% of revenue over the last four quarters, as reported in financial statements, indicating a capital-light model where growth is funded by R&D and partnerships rather than heavy fixed assets.
CapEx intensity is low, with the highest quarter at 2.7% of revenue in 2026Q2, which is typical for a biotech that outsources manufacturing. This suggests that the company's cash flow is not constrained by maintenance capex, but rather by the high R&D and SG&A costs that are expensed as incurred. The low capital intensity supports the view that Alnylam's platform is scalable, but it also means that future growth will depend on continued investment in clinical trials and commercial expansion, which are captured in operating expenses rather than capex.
Working Capital Swings Distort Cash Flow
Working capital changes were highly volatile, swinging from -$281.7M in 2026Q1 to +$30.3M in 2026Q2, as per cash flow statements, reflecting milestone timing and inventory builds for new launches.
The large negative working capital changes in several quarters, particularly 2026Q1 and 2025Q3, indicate that revenue growth is consuming cash through receivables and inventory, likely due to the expansion of Amvuttra and new geographic launches. These swings are not necessarily a sign of operational inefficiency but rather the lumpy nature of collaboration payments and the need to build inventory ahead of demand. Investors should expect continued volatility in working capital as the company scales, but the underlying trend in collections and payables appears manageable given the high gross margins.
No Capital Returns, Focus on Pipeline
Alnylam paid no dividends and made no buybacks over the past ten quarters, as reported in financial statements, with all cash flow directed toward R&D and commercial expansion.
The absence of capital returns is consistent with a growth-stage biotech that is reinvesting all cash into its pipeline and commercial infrastructure. The company has instead relied on non-dilutive partnerships, such as the Roche deal for Zilebesiran, to fund development, which reduces the need for equity issuance. However, the high debt-to-equity ratio of 1.62 suggests that the balance sheet is leveraged, and investors should monitor whether the company will need to raise additional capital or refinance debt if cash flows decelerate.
Cumulative Earnings Outpace Cash Generation
Over the last ten quarters, cumulative net income was approximately $387M while operating cash flow totaled $762M, as per financial statements, indicating that cash generation has exceeded reported earnings on a cumulative basis.
The cumulative divergence is positive, with operating cash flow exceeding net income by a wide margin, largely due to non-cash charges like depreciation and stock-based compensation. This suggests that the company's earnings quality is actually higher than the recent quarterly conversion ratios imply, as the large working capital swings are timing-related. However, the reliance on milestone payments and the volatility in quarterly cash flow warrant caution, as the cumulative figure may be flattered by one-time collaboration receipts that are not recurring.
Non-Cash Charges and Financing Complexities
Stock-based compensation averaged $78M per quarter over the last year, as disclosed in filings, which, when added back to operating cash flow, suggests that cash earnings are stronger than GAAP net income but also highlights potential dilution.
The cash flow statement obscures the true cost of stock-based compensation, which is a non-cash expense that reduces net income but not operating cash flow. This makes the company appear more profitable on a cash basis, but it also means that shareholders are being diluted over time. Additionally, the Blackstone royalty financing and other collaboration agreements involve complex accounting that can obscure the true leverage and cash flow obligations. Investors should carefully parse the footnotes to understand the sustainability of cash flows and the potential for future dilution or refinancing pressure.