Cash flow is highly volatile, with operating cash flow swinging from -$792.8M in 2026Q1 to +$565.5M in 2026Q2 due to a $647M working capital swing, while free cash flow remains deeply negative, averaging roughly -$250M per quarter over the prior four quarters.
Ionis Pharmaceuticals, Inc. (IONS) cash flow statement — 30-year operating, investing & financing cash flows
| Metric | TTM | Dec'25 | Dec'24 | Dec'23 | Dec'22 | Dec'21 | Dec'20 | Dec'19 | Dec'18 | Dec'17 | Dec'16 | Dec'15 | Dec'14 | Dec'13 | Dec'12 | Dec'11 | Dec'10 | Dec'09 | Dec'08 | Dec'07 | Dec'06 | Dec'05 | Dec'04 | Dec'03 | Dec'02 | Dec'01 | Dec'00 | Dec'99 | Dec'98 | Dec'97 | Dec'96 |
|---|
| Cash from Operations | -496.43M | -268.58M | -500.95M | -307.51M | -274.37M | 30.8M | 35.89M | 345.72M | 602.89M | 174.15M | -112.11M | 21.13M | 6.29M | 63.49M | 1.88M | -114.8M | -63.59M | -108.44M | 212.03M | 36.09M | -53.23M | -61.74M | -101.75M | -95.47M | -94.38M | -6.16M | -23.19M | -48.4M | -34.7M | -20.6M | -21.2M |
| Operating CF Margin % | - | -28.45% | -71.04% | -39.04% | -46.71% | 3.8% | 4.92% | 30.8% | 100.54% | 33.87% | -30.07% | 7.45% | 2.93% | 43.11% | 1.84% | -115.86% | -58.63% | -89.18% | 197.81% | 61.86% | -358.2% | -153.84% | -238.72% | -190.99% | -117.71% | -11.56% | -62.24% | -142.77% | -88.52% | -63% | -93.39% |
| Operating CF Growth % | -185.02% | 46.38% | -62.9% | -12.08% | -990.84% | -14.19% | -89.62% | -42.66% | 246.19% | 255.34% | -630.67% | 236.12% | -90.1% | 3284.49% | 101.63% | -80.52% | 41.36% | -151.14% | 487.44% | 167.81% | 13.79% | 39.32% | -6.57% | -1.16% | -1432.66% | 73.44% | 52.09% | -39.48% | -68.45% | 2.83% | -40.4% |
| Net Income | -564.78M | -381.39M | -453.9M | -366.29M | -269.72M | -28.6M | -486.77M | 303.26M | 214.99M | -17.3M | -86.56M | -88.28M | -38.98M | -60.64M | -65.48M | -84.8M | -61.25M | 150.67M | -11.96M | -10.99M | -45.9M | -72.4M | -142.5M | -95M | -72.24M | -73.83M | -53.48M | -59.2M | -43M | -31.1M | -26.5M |
| Depreciation & Amortization | 29.41M | 22.69M | 21.99M | 22.5M | 22.11M | 19.56M | 17.16M | 15.99M | 12.53M | 8.35M | 9.03M | 10.24M | 9.4M | 9.78M | 10.76M | 11.78M | 9.18M | 11.33M | 6.82M | 6.76M | 7.22M | 9.69M | 12.17M | 12.25M | 10.3M | 6.97M | 5.54M | 5.2M | 4.3M | 3.2M | 2.6M |
| Stock-Based Compensation | 120.02M | 133.87M | 130.2M | 105.81M | 100.26M | 120.68M | 230.12M | 146.57M | 131.31M | 85.97M | 72.11M | 59.31M | 31.38M | 11.42M | 8.57M | 9.85M | 12.16M | 13.38M | 15.06M | 9.91M | 5.75M | -544K | 913K | 0 | -3M | 4.57M | 0 | 0 | 0 | 0 | 0 |
| Deferred Taxes | 0 | 0 | 0 | 0 | 0 | 25.31M | 313.27M | -7.1M | -290.52M | 14.07M | 10.74M | -12.47M | -12.84M | -5.91M | -9.11M | 13.84M | 16.25M | 5.25M | -26.26M | -37.21M | -31.03M | 544K | -913K | 0 | 3M | -4.57M | 0 | 0 | 0 | 0 | 0 |
| Other Non-Cash Items | -91.47M | 7.45M | 10.15M | 7.73M | -134.59M | 7.67M | 35.66M | 55.69M | 35.17M | 39.5M | 34.1M | 31.75M | 12.11M | 22.83M | 6.93M | 1.92M | 1.51M | -184.96M | 17.51M | 14.02M | 8.16M | 9.9M | 52.8M | 11.53M | -14.38M | 35.53M | 25.67M | 15.5M | 11.4M | 400K | -100K |
| Working Capital Changes | 10.39M | -51.22M | -209.39M | -77.26M | 7.57M | -113.82M | -73.56M | -168.71M | 499.41M | 43.56M | -151.53M | 20.57M | 5.21M | 86.03M | 50.21M | -67.39M | -41.44M | -104.12M | 210.86M | 53.6M | 2.59M | -8.93M | -24.22M | -24.26M | -18.06M | 25.18M | -908K | -9.9M | -7.4M | 6.9M | 2.8M |
| Change in Receivables | -73.84M | 26.13M | 5.59M | -72.06M | 36.36M | 5.05M | -22M | -44.18M | 514K | 15.72M | -89.36M | -14.12M | 9.77M | -4.98M | 3.42M | 2.95M | 4.71M | -16.84M | 2.91M | 1.18M | 1.9M | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Change in Inventory | -11.23M | -13.67M | -5.07M | -6.39M | 2.77M | -2.84M | -1.26M | -5.41M | 1.4M | -2.49M | -590K | -609K | 1.74M | -1.91M | -1.98M | -1.66M | 284K | -17K | -1.32M | -1.96M | 90K | 1.77M | -9.7M | -2.9M | -11.09M | 0 | 0 | 0 | 0 | 0 | 0 |
| Change in Payables | 52.65M | -15.36M | 15.99M | 8.12M | 1.09M | -6M | -2.75M | -16.34M | -655K | 1.78M | -10.68M | 9.21M | 4.82M | 66K | 1.29M | 875K | 1.32M | -3.65M | 962K | -794K | 1.21M | -4.87M | -1.8M | 0 | -2.15M | 3.8M | 0 | 0 | 0 | 0 | 0 |
| Cash from Investing | 232.15M | -277.78M | -134.03M | -214.13M | -262.64M | 194.91M | 274.48M | -41.27M | -929.56M | -358.29M | 56.6M | -60.05M | -82.85M | -255.73M | 18M | 110.9M | 23.69M | -212.29M | -234.25M | -55.64M | -32.61M | 540K | 83.73M | -15.12M | -60.37M | -143.49M | -95.38M | -7.9M | 9.1M | -15.2M | -11.3M |
| Capital Expenditures | -65.77M | -51.44M | -45.28M | -23.8M | -20.1M | -17.9M | -41.05M | -36.28M | -17.65M | -37.86M | -11.53M | -11.75M | -11.1M | -5.36M | -5.17M | -11M | -17.56M | -16.29M | -17.07M | -5.01M | -2.56M | -422K | -3.53M | -7.55M | -36.83M | -9.29M | -1.65M | -4.8M | -4.4M | -3.5M | -900K |
| CapEx % of Revenue | 7.53% | 5.45% | 6.42% | 3.02% | 3.42% | 2.21% | 5.63% | 3.23% | 2.94% | 7.36% | 3.09% | 4.14% | 5.18% | 3.64% | 5.07% | 11.1% | 16.18% | 13.4% | 15.92% | 8.59% | 17.2% | 1.05% | 8.27% | 15.11% | 45.94% | 17.43% | 4.43% | 14.16% | 11.22% | 10.7% | 3.96% |
| Acquisitions | 0 | 0 | 0 | 22K | 254.08M | 5.95M | 5.93M | 5.38M | 4.04M | 2.51M | 4.47M | 25.53M | 22.95M | 3.81M | -3M | 3.67M | 6.01M | 2.88M | 3.4M | -80.4M | 1.51M | 14.02M | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Investments | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Other Investing | -5.3M | -5.64M | -5.06M | -4.21M | 0 | -5.95M | -5.93M | -5.38M | -4.04M | -323.53M | 63.71M | -52.36M | -75.33M | -3.81M | 3M | -3.67M | -11.91M | -2.88M | -3.4M | -83.12M | -1.51M | 832K | -16.41M | -11.6M | -19.05M | -36.4M | -23.78M | -16.5M | -4M | -3.5M | -800K |
| Cash from Financing | 749.91M | 675.84M | 478.06M | 644.08M | -55.3M | 245.93M | -596.61M | 100.02M | 475.87M | 229.09M | 11.39M | 24.73M | 59.59M | 227.72M | 39.13M | -672K | 4.7M | 202M | 107.58M | 43.65M | 149.46M | 37.6M | 12.15M | 41.85M | 129.59M | 237.04M | 122.88M | 63.9M | 15.1M | 36.7M | 23M |
| Debt Issued (Net) | 483.27M | 483.24M | -44.67M | 86.9M | -50.69M | 313.57M | 0 | 97M | 0 | -23.98M | -3.07M | -558K | 35.05M | -8.53M | 29.66M | -4.24M | 340K | 3.57M | 4.81M | 22.3M | -7.85M | -11.57M | 8.1M | 40.15M | 129.59M | 26.58M | 4.64M | -400K | 11.2M | 36.7M | 23.1M |
| Equity Issued (Net) | 266.64M | 192.6M | 522.73M | 49.44M | 6.37M | 85.71M | -103.96M | 85.27M | 475.87M | 255.11M | 13.42M | 24.89M | 23.07M | 0 | 0 | 3.57M | 4.36M | 13.16M | 62.68M | 11.35M | 86.36M | 49.17M | 4.05M | 1.7M | 8.89M | 210.46M | 0 | 64.3M | 3.9M | 0 | 0 |
| Dividends Paid | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Share Repurchases | 0 | 0 | 0 | 0 | 0 | 0 | -90.55M | -34.39M | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Other Financing | 0 | 0 | 0 | 507.74M | -10.98M | -153.34M | -492.65M | -82.24M | 0 | -2.04M | 1.04M | 396K | 1.46M | 236.25M | 9.47M | 0 | 0 | 185.28M | 40.1M | 10M | 70.95M | 0 | 0 | 0 | -8.89M | 0 | 118.24M | 0 | 0 | 0 | -100K |
| Net Change in Cash | 485.31M | 130.18M | -157.19M | 122.79M | -592.72M | 471.53M | -285.62M | 404.47M | 149.19M | 44.95M | -44.11M | -14.2M | -16.98M | 35.49M | 59.01M | -4.58M | -35.2M | -118.73M | 85.37M | 24.1M | 63.63M | -23.6M | -5.87M | -68.74M | -25.16M | 87.4M | 4.32M | 7.7M | 15.1M | 36.7M | 23M |
| Free Cash Flow | -558.88M | -320.03M | -546.23M | -335.52M | -294.47M | 12.9M | -5.16M | 309.44M | 585.24M | 136.29M | -123.63M | 9.38M | -4.82M | 58.13M | -3.29M | -125.8M | -81.15M | -124.73M | 194.96M | 31.08M | -55.78M | -62.16M | -105.28M | -103.03M | -131.22M | -15.45M | -24.84M | -53.2M | -39.1M | -24.1M | -22.1M |
| FCF Margin % | -63.96% | -33.9% | -77.46% | -42.6% | -50.13% | 1.59% | -0.71% | 27.56% | 97.59% | 26.51% | -33.17% | 3.31% | -2.25% | 39.47% | -3.23% | -126.96% | -74.81% | -102.58% | 181.89% | 53.28% | -375.4% | -154.89% | -246.99% | -206.1% | -163.65% | -28.99% | -66.66% | -156.93% | -99.74% | -73.7% | -97.36% |
| FCF Growth % | -91.42% | 41.41% | -62.8% | -13.94% | -2383.06% | 350.16% | -101.67% | -47.13% | 329.4% | 210.24% | -1418.47% | 294.58% | -108.29% | 1864.75% | 97.38% | -55.02% | 34.94% | -163.98% | 527.22% | 155.73% | 10.27% | 40.95% | -2.18% | 21.48% | -749.56% | 37.81% | 53.32% | -36.06% | -62.24% | -9.05% | -36.42% |
| FCF per Share | -3.38 | -2.00 | -3.65 | -2.34 | -2.08 | 0.09 | -0.04 | 2.17 | 4.37 | 1.08 | -1.02 | 0.08 | -0.04 | 0.53 | -0.03 | -1.26 | -0.82 | -1.27 | 2.06 | 0.37 | -0.75 | -0.99 | -1.86 | -1.86 | -2.41 | -0.35 | -0.67 | -1.85 | -1.45 | -0.91 | -0.87 |
| FCF Conversion (FCF/Net Income) | 0.99x | 0.70x | 1.10x | 0.84x | 1.02x | -1.08x | -0.08x | 1.24x | 2.20x | 503.32x | 1.86x | -0.24x | -0.16x | -1.05x | -0.03x | 1.35x | 1.04x | -0.70x | -11.67x | -3.28x | 1.16x | 0.85x | 0.71x | 1.01x | 1.31x | 0.08x | 0.43x | 0.82x | 0.81x | 0.66x | 0.80x |
| Interest Paid | 10.78M | 10.78M | 10.87M | 6.51M | 2.9M | 4.78M | 6.25M | 9.87M | 0 | 0 | 0 | 0 | 0 | 6M | 0 | 4.8M | 4.89M | 4.88M | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Taxes Paid | 371K | 0 | 0 | 48.33M | 5.01M | 38K | 25.86M | 9.04M | 0 | 0 | 0 | 0 | 0 | 2K | 0 | 2K | 7.27M | 13.21M | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Quick answers to the most common questions about buying IONS stock.
Ionis Pharmaceuticals, Inc. (IONS) generated $-268.6M in net cash from operating activities in 2025. This reflects the cash generated directly from core business operations.
Ionis Pharmaceuticals, Inc. (IONS) reported negative free cash flow of $320.0M in 2025, indicating capital requirements exceeded cash from operations.
Ionis Pharmaceuticals, Inc. (IONS) spent $51.4M on capital expenditures in 2025. CapEx represents the cash invested in physical assets like property, plant, and equipment to maintain or grow the business.
Key Metrics
Top Statement Risk
Episodic revenue and cash burn
Metrics are mathematically derived from official filings.
Cash Conversion Distorted by Working Capital
In 2026Q2, Ionis reported a net loss of $114.6M but generated $565.5M in operating cash flow, a swing driven by a $647M working capital inflow, per reported financials.
The positive operating cash flow in 2026Q2 appears to be a working capital artifact rather than an improvement in underlying earnings, as the $647M working capital change dwarfs the net loss. This suggests that cash conversion is highly volatile and dependent on the timing of collaboration payments and receivables, not on sustainable operational profitability. Investors should monitor whether such swings recur or if they represent a one-time settlement.
Free Cash Flow Remains Deeply Negative
Excluding the anomalous 2026Q2, Ionis's free cash flow averaged roughly -$250M per quarter over the prior four quarters, according to SEC filings, indicating persistent cash burn.
The only positive FCF quarter in the dataset is 2026Q2, which appears to be driven by a large working capital inflow, while 2025Q2's positive FCF was tied to a one-time collaboration payment. The underlying trend suggests that FCF is structurally negative, with negative FCF margins in most quarters, reflecting heavy R&D and commercialization spending. This implies that Ionis remains dependent on external financing or partnership inflows to fund operations.
Capital Expenditures Modest Relative to Burn
CapEx averaged about $13M per quarter over the last ten quarters, representing roughly 6% of revenue, per reported data, indicating a capital-light model.
The low capital intensity suggests that Ionis's business model relies more on intellectual property and partnerships than on physical assets, with CapEx/Revenue ratios ranging from 2.7% to 11.3%. This implies that the primary cash drain is operating expenses, particularly R&D and SG&A, rather than capital investments. The modest CapEx also means that depreciation is minimal, so the gap between net income and operating cash flow is largely driven by working capital and non-cash charges like stock-based compensation.
Working Capital Swings Drive Cash Flow Volatility
Working capital changes swung from -$730M in 2026Q1 to +$647M in 2026Q2, per financial statements, creating extreme quarter-to-quarter cash flow variability.
The massive working capital swings appear to be tied to the timing of collaboration payments and milestone receipts, as evidenced by the $647M inflow in 2026Q2 following a $730M outflow in the prior quarter. This pattern suggests that Ionis's operating cash flow is heavily influenced by the timing of large, episodic payments from partners, rather than steady operational performance. Investors should expect continued volatility in operating cash flow as these payments are recognized.
No Capital Returns, Focus on Internal Investment
Ionis paid no dividends and made no buybacks over the last ten quarters, per reported data, with all cash directed toward R&D and commercialization.
The absence of capital returns indicates that Ionis is in a reinvestment phase, prioritizing internal development over shareholder distributions. This is consistent with the company's negative earnings and cash flow, as it relies on external capital and partnership proceeds to fund its operations. The lack of buybacks or dividends suggests that management is not signaling confidence in near-term profitability, and investors should focus on the pipeline's potential to generate future returns.
Cumulative Losses Outpace Cash Burn
Over the last ten quarters, Ionis's cumulative net loss of approximately $1.0B was smaller than its cumulative operating cash outflow of about $1.1B, per reported figures.
The slight divergence between cumulative net income and operating cash flow suggests that non-cash charges like stock-based compensation and depreciation are partially offset by working capital inflows. However, the overall trend indicates that cash burn is slightly higher than accounting losses, which may reflect the timing of payments and the company's reliance on external financing. This implies that Ionis's cash position is being eroded faster than its income statement suggests, warranting close monitoring of liquidity.
What the Cash Flow Statement Obscures
Stock-based compensation averaged $35M per quarter over the last ten quarters, per reported data, adding a non-cash expense that inflates the gap between net income and operating cash flow.
While SBC is a non-cash charge, it represents real dilution to shareholders and should be considered when evaluating the sustainability of cash burn. Additionally, the 2025Q1 D&A figure of $4.8B appears anomalous and may indicate a data error or a one-time impairment, which warrants further investigation. The cash flow statement may also obscure the timing of collaboration payments, as the large working capital swings suggest that reported operating cash flow is not a reliable indicator of underlying business performance.